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youxx189銅蟲 (小有名氣)
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[求助]
用ONIOM關(guān)鍵詞算吸收,請問可以看分子軌道嗎? 已有1人參與
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用ONIOM關(guān)鍵詞算吸收,請問可以看分子軌道嗎?得到的chk文件轉(zhuǎn)化成fchk文件會造成數(shù)據(jù)丟失,在Gaussview里無法打開。 輸入文件: %chk=packing1_guest_abs_ONIOM.chk %nprocshared=20 %mem=12000MB #p oniom(PBE1PBE/genecp td=(singlets,nstates=20,direct):uff)=embedcharge test absorption 0 1 0 1 0 1 C 26.8564499443,11.2974579201,22.535374973 L C 26.4312706227,12.5897273583,22.1656391631 L C 25.079756231,12.9545921491,22.2751903325 L C 24.1694372817,11.9921553489,22.7275839214 L C 24.5970630014,10.7317662379,23.1036871816 L C 25.9390511173,10.3569276904,23.0333609336 L H 27.8993300059,11.0327314821,22.4387729637 L 中間略到好多原子 C 33.1316875537,25.2458454493,20.5017776507 L H 34.6438528841,23.5215656048,22.9626666632 L H 34.5537458777,23.6020072384,20.5486274853 L C 33.0912226367,25.4397359482,19.0253450849 L O 33.7582638392,24.7213374764,18.3023322806 L O 32.3461046073,26.4006128366,18.4698156726 L C H N O 0 6-31G** **** Ir 0 LANL2DZ **** Ir 0 LANL2DZ |
銅蟲 (小有名氣)
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重算了一次,用新的chk轉(zhuǎn)化的時候出現(xiàn)了下面的錯誤 [youxx@mu01 host-abs]$ module unload gauss/g09d01 [youxx@mu01 host-abs]$ module load gauss/g16a03 [youxx@mu01 host-abs]$ export GAUSS_MEMDEF=4000000000 [youxx@mu01 host-abs]$ formchk packing1_host_abs-a_ONIOM.chk Read checkpoint file packing1_host_abs-a_ONIOM.chk Write formatted file packing1_host_abs-a_ONIOM.fchk Illegal MolTyp in RwMol1. Error termination via Lnk1e at Mon Jun 22 14:00:18 2020. Error: segmentation violation rax 0000000000000000, rbx 0000000002b377e0, rcx ffffffffffffffff rdx 000000000002912b, rsp 00007ffd1497a6d8, rbp 00007ffd1497a730 rsi 000000000000000b, rdi 000000000002912b, r8 00002b17996d2ac0 r9 00002b17996d2ac0, r10 00007ffd14979ae0, r11 0000000000000206 r12 0000000003a8bf68, r13 0000000003a8bf60, r14 0000000003a8bf50 r15 0000000000000002 /lib64/libpthread.so.0(+0xf6d0) [0x2b17998a86d0] /lib64/libc.so.6(kill+0x7) [0x2b1799ded547] formchk() [0x497ec9] formchk() [0x46f560] formchk() [0x46b8af] formchk() [0x48e188] formchk() [0x48cf51] formchk() [0x453731] formchk() [0x4516a8] formchk() [0x450af4] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b1799dd9445] formchk() [0x4509e9] Aborted |
新蟲 (小有名氣)
版主 (著名寫手)
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如果你的chk文件本身很大 比如說上G大小了 那轉(zhuǎn)換一般會內(nèi)存不夠用導(dǎo)致出錯?梢栽诃h(huán)境變量里加上 export GAUSS_MEMDEF=4000000000 把內(nèi)存調(diào)成可用4 GB應(yīng)該就能解決問題。 TD計算chk文件中的分子軌道的信息就是基態(tài)分子軌道的信息 并沒有什么特殊之處 發(fā)自小木蟲IOS客戶端 |
銅蟲 (小有名氣)
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謝謝老師 我加了環(huán)境變量還是報錯 [youxx@mu01 guest-abs]$ module unload gauss/g09d01 [youxx@mu01 guest-abs]$ module load gauss/g16a03 [youxx@mu01 guest-abs]$ export GAUSS_MEMDEF=4000000000 [youxx@mu01 guest-abs]$ formchk packing1ONIOM_dimer1-2.chk Read checkpoint file packing1ONIOM_dimer1-2.chk Write formatted file packing1ONIOM_dimer1-2.fchk Missing data for FChkPn. Error termination via Lnk1e at Mon Jun 22 13:36:29 2020. Error: segmentation violation rax 0000000000000000, rbx 0000000002b377e0, rcx ffffffffffffffff rdx 000000000001ef4c, rsp 00007ffe7319ed28, rbp 00007ffe7319ed80 rsi 000000000000000b, rdi 000000000001ef4c, r8 00002b4517b60ac0 r9 00002b4517b60ac0, r10 00007ffe7319e120, r11 0000000000000206 r12 000000000000000c, r13 0000000000000001, r14 0000000000000001 r15 0000000000000000 /lib64/libpthread.so.0(+0xf6d0) [0x2b4517d366d0] /lib64/libc.so.6(kill+0x7) [0x2b451827b547] formchk() [0x497ec9] formchk() [0x46f560] formchk() [0x46b8af] formchk() [0x453755] formchk() [0x4516a8] formchk() [0x450af4] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b4518267445] formchk() [0x4509e9] Aborted |
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